Famitsu retail + digital

Best selling Microsoft published games in Japan

[WIU] Minecraft: Wii U Edition: 225.732
[360] Blue Dragon: 203k
[360] Kinect Adventures!: 154k
[360] Viva Piñata [All Versions] 113k
[360] Lost Odyssey 109.517

Best selling third party games on Wii U

[WIU] Minecraft: Wii U Edition: 225.732
Monster Hunter 3 Ultimate: 224.986
Taiko no Tatsujin: Wii U Version!: 181.289
Pokken Tournament: 156.810 (Not a third party game, but not published by Nintendo either)
Dragon Quest X: Nemureru Yuusha to Michibiki no Meiyuu Online [All Versions]: 148.706

Minecraft in Japan:

[PSV] Minecraft: PlayStation Vita Edition: 1.081.559
[PS3] Minecraft: PlayStation 3 Edition [PlayStation Store]: 355.000
[PS4] Minecraft: PlayStation 4 Edition: 313.531
[WIU] Minecraft: Wii U Edition: 225.732
[360] Minecraft: Xbox 360 Edition: 24.394
[XB1] Minecraft: Xbox One Edition: 855

[ALL] Minecraft: 2.001.071